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We will use this Etherpad for chatting, taking notes, and sharing URLs and bits of code. Please note that this location is no longer active. The archived version can be found at https://fasrc.github.io/2015-08-19-HU-FASRC-latest.html.
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Schedule
| ******************************Day1 (October 8th) Schedule****************************** | ||
|---|---|---|
| 9:00 - 9:30 | Welcome, introductions, code of conduct | All |
9:30 - 9:50 | Introduction to workshop, scope, learning objectives | Radhika |
| 9:50 - 10:30 | Unix 1: Introduction to the shell | |
10:30 - 10:45 | Coffee | |
| 10:45 - 11:35 | Unix 1: Introduction to the shell (continued) | |
| 11:35 - 12:30 | Unix 2: Searching and redirection | |
12:30 - 13:30 | Lunch | |
| 13:30 - 14:30 | Unix 3: For loop and shell scripts | |
14:30 - 15:00 | Unix 4: Permissions and $PATH | Radhika |
15:00 - 15:15 | Coffee | |
15:15 - 15:45 | Introduction to High Performance Computing | Radhika |
| 15:45 - 17:00 | Orchestra basics | Kris |
| ******************************Day2 (October 9th) Schedule****************************** | ||
|---|---|---|
| 9:00 - 9:10 | HPC refresher | Radhika |
9:10 - 9:40 | Project and data management | Meeta |
| 9:40 - 10:30 | Data QC | Mary |
10:30 - 10:45 | Coffee | |
| 10:45 - 11:25 | Data QC (continued) | Mary |
| 11:25 - 12:30 | RNA-Seq workflow | Radhika |
12:30 - 13:30 | Lunch | |
| 13:30 - 14:00 | RNA-Seq workflow (continued) | Radhika |
14:00 - 15:00 | Automating RNA-Seq workflow | Meeta |
15:00 - 15:15 | Coffee | |
15:15 - 16:15 | Automating RNA-Seq workflow (continued) | Meeta |
| 15:45 - 17:00 | Resources and wrap-up | Radhika |
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