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| ***************************** * Day1 (October 8th) Schedule * ***************************** | ||
|---|---|---|
| 9:00 - 9:30 | Welcome, introductions, code of conduct | All |
9:30 - 9:50 | Introduction to workshop, scope, learning objectives | Radhika |
| 9:50 - 10:30 | Unix 1: Introduction to the shell | |
10:30 - 10:45 | Coffee | |
| 10:45 - 11:35 | Unix 1: Introduction to the shell (continued) | |
| 11:35 - 12:30 | Unix 2: Searching and redirection | |
12:30 - 13:30 | Lunch | |
| 13:30 - 14:30 | Unix 3: For loop and shell scripts | |
14:30 - 15:00 | Unix 4: Permissions and $PATH | Radhika |
15:00 - 15:15 | Coffee | |
15:15 - 15:45 | Introduction to High Performance Computing | Radhika |
| 15:45 - 17:00 | Orchestra basics | Kris |
| ****************************** Day2 (October 9th) Schedule ****************************** | ||
|---|---|---|
| 9:00 - 9:10 | HPC refresher | Radhika |
9:10 - 9:40 | Project and data management | Meeta |
| 9:40 - 10:30 | Data QC | Mary |
10:30 - 10:45 | Coffee | |
| 10:45 - 11:25 | Data QC (continued) | Mary |
| 11:25 - 12:30 | RNA-Seq workflow | Radhika |
12:30 - 13:30 | Lunch | |
| 13:30 - 14:00 | RNA-Seq workflow (continued) | Radhika |
14:00 - 15:00 | Automating RNA-Seq workflow | Meeta |
15:00 - 15:15 | Coffee | |
15:15 - 16:15 | Automating RNA-Seq workflow (continued) | Meeta |
| 15:45 - 17:00 | Resources and wrap-up | Radhika |
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