General Information
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| ***************************** Day1 (October 8th) Schedule ***************************** | ||
|---|---|---|
| 9:00 - 9:30 | Welcome, introductions, code of conduct | All |
9:30 - 9:50 | Radhika | |
| 9:50 - 10:30 | Unix 1: Introduction to the shell | Radhika |
10:30 - 10:45 | Coffee | |
| 10:45 - 11:35 | Unix 1: Introduction to the shell (continued) | Radhika |
| 11:35 - 12:30 | Unix 2: Searching and redirection | Mary |
12:30 - 13:30 | Lunch | |
| 13:30 - 14:30 | Unix 3: For loop and shell scripts | Meeta |
14:30 - 15:00 | Radhika | |
15:00 - 15:15 | Coffee | |
15:15 - 15:45 | Radhika | |
| 15:45 - 17:00 | Orchestra basics | Kris Holton, HMS-RC |
| ***************************** Day2 (October 9th) Schedule ***************************** | ||
|---|---|---|
| 9:00 - 9:10 | HPC refresher | Radhika |
9:10 - 9:40 | Meeta | |
| 9:40 - 10:30 | Data QC | Mary |
10:30 - 10:45 | Coffee | |
| 10:45 - 11:25 | Data QC (continued) | Mary |
| 11:25 - 12:30 | RNA-Seq workflow | Radhika Meeta |
12:30 - 13:30 | Lunch | |
| 13:30 - 14:00 | RNA-Seq workflow (continued) | Radhika Meeta |
14:00 - 15:00 | MeetaRadhika | |
15:00 - 15:15 | Coffee | |
15:15 - 16:15 | MeetaRadhika | |
| 15:45 - 17:00 | Resources and wrap-up | Radhika |
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This workshop was sponsored by the HMS Tools and Technology Committee (TnT) and the Harvard NeuroDiscovery Center (HNDC).
The structure, objectives, and workflow of this workshop is derived from the Data Carpentry genomics workshop. Data Carpentry is supported by the Gordon and Betty Moore Foundation and a partnership of several NSF-funded BIO Centers (NESCent, iPlant, iDigBio, BEACON and SESYNC) and Software Carpentry. The structure and objectives of the curriculum as well as the teaching style are informed by Software Carpentry.
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