ChIP-seq Practice Exercises

***NOTE: When working on O2, be sure to run this in /n/scratch2/ rather than your home directory .****

# ChIP-Seq Analysis Workflow

1.  Create a directory on /n/scratch2 using your eCommons user ID as the directory name. Within that directory create a directory called HCFC1_chipseq.

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OPTIONAL: If you feel very ambitious get X11 setup on your personal account and try running ChIPQC to create a report for HCFC1. Discuss the quality of the data using these metrics. 

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